Scaffold Ga0211611_1061828

Overview

Basic Information

• Taxon OID: 3300020357
• Scaffold ID: Ga0211611_1061828
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000686 (ERX555950-ERR598956)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 890
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_123
• Coordinates
  • Lat. (^o): -8.896
  • Long. (^o): -140.2861
  • Depth (m): 150

Associated Families

Family	Category	Number of Sequences	3D Structure?
F081737	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211611_10618283	F081737	AGAAG	MTEYDVRPMYEEQVKKDTITSLHANGGVLEVRYADGTMAIYKKSKWRNKFKLIRRRQ