Scaffold Ga0211611_1003647

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0211611_1003647

Scaffold Ga0211611_1003647

Overview

Basic Information
Taxon OID	3300020357 Open in IMG/M
Scaffold ID	Ga0211611_1003647 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000686 (ERX555950-ERR598956)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3630
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (75.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_123
Coordinates	Lat. (^o)	-8.896	Long. (^o)	-140.2861	Alt. (m)		Depth (m)	150
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007390	Metagenome	352	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211611_10036477	F007390	GAGG	MRKFLILLFLSVGLSQTTFTDEEMINLENDFIYLENKVDSLAYQDSLKAIMITTLEEELKLTNEELKLTNEQLTLTEKKVKLVKPSWWENKWLYFGYGATLSYAVVTLINQMGDAIDIF

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.