NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211612_1010857

Scaffold Ga0211612_1010857


Overview

Basic Information
Taxon OID3300020356 Open in IMG/M
Scaffold IDGa0211612_1010857 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000686 (ERX555994-ERR599157)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2046
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_123
CoordinatesLat. (o)-8.896Long. (o)-140.2861Alt. (m)Depth (m)150
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002980Metagenome / Metatranscriptome516Y
F072739Metagenome / Metatranscriptome121N

Sequences

Protein IDFamilyRBSSequence
Ga0211612_10108571F072739AGGAGMKKLLSLFTLVFLLGCATSQVEAQSGKTKVQSKIASYEAEKTLDDIKWFDGEPEGIQLIQISINENILNAYPELRD
Ga0211612_10108574F002980N/AMKKLLSLLLLTGTLFAQANNVFTLNPSVSSAGMGNVGIAHADVKNVFHNPAFAGLNKRHQEVSYVKWLPNLSDDMGYQNILYTSSLGWSGELFYFDYGTQTEADQGGIIIGDFESASYRISGGYGFQIKDWMFGARLNIYNHNLIDDIDIGMNYGVDLGVYKEFGNTSLGIVLKDVGGETEILEQSLNLPMSVGIGVGQKFGNFTLASDIKMFEDYNSIGLGGVYDLGIASFKLGYYTESEFEVDYITLGGSIDAGIVDLSLAYYYNTESFHNETIMLSFGFDL
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