NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211598_1133838

Scaffold Ga0211598_1133838


Overview

Basic Information
Taxon OID3300020355 Open in IMG/M
Scaffold IDGa0211598_1133838 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000676 (ERX556077-ERR598988)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)559
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_124
CoordinatesLat. (o)-9.067Long. (o)-140.6346Alt. (m)Depth (m)120
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002965Metagenome / Metatranscriptome517Y

Sequences

Protein IDFamilyRBSSequence
Ga0211598_11338381F002965GAGGMIKKIPEMCGWIGMVLIHGATAPTSISVIMGWSTNLPPLNFILIVWLGLFLFLIRAIYAKDVLYIVSNAIGFS

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