Scaffold Ga0211598_1001336

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211598_1001336

Scaffold Ga0211598_1001336

Overview

Basic Information
Taxon OID	3300020355 Open in IMG/M
Scaffold ID	Ga0211598_1001336 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000676 (ERX556077-ERR598988)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	11411
Total Scaffold Genes	21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	17 (80.95%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_124
Coordinates	Lat. (^o)	-9.067	Long. (^o)	-140.6346	Alt. (m)		Depth (m)	120
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006217	Metagenome	378	Y
F103094	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211598_100133620	F006217	AGGA	MIELLLSVIEEPNQIHKYCMSKHDHWTGRAACVQELRHAQRKLEVERLRQFLKENPHYRYPGMALPNGKIKPLDVCWGSDKTYYIGSDKQKRSKC
Ga0211598_100133621	F103094	N/A	PEKLNIEMSISTEHSCYVSIKDYTVYIEVSEATNNKPYISFWKKGWEDDRAVTLSH

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