Scaffold Ga0211613_1039691

Overview

Basic Information

• Taxon OID: 3300020353
• Scaffold ID: Ga0211613_1039691
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000686 (ERX556093-ERR598998)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1098
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_123
• Coordinates
  • Lat. (^o): -8.896
  • Long. (^o): -140.2861
  • Depth (m): 150

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004906	Metagenome / Metatranscriptome	419	Y
F036272	Metagenome	170	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211613_10396911	F036272	N/A	QPLEFFNKPYYIGVGGPNLSQWRNYYKGQIAEVGLWSDALKGYEMELIFDKGIINNKGEYVTSKIPVGAWNFKGGYDNITFDISGNNNHAKCYNVGFANKSLKSNTERYLPYRRNGAYGYLSSNEEYLNIENLLRTSHHEVKANRNTFNKKIRMNMSDMEKDGISSTKFRIVNRQDYQGKHEIIEVVI
Ga0211613_10396912	F004906	AGGAG	MANKKEETTTPESNELSAIAVKSLTNLEEKVEAIDWKLWEIYNIIKTYVETNPSGPSVSAPSVSQPGPSASEIASELAKSLGDGTEKKSVVGKLFGK