Scaffold Ga0211613_1005550

Overview

Basic Information

• Taxon OID: 3300020353
• Scaffold ID: Ga0211613_1005550
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000686 (ERX556093-ERR598998)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2879
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_123
• Coordinates
  • Lat. (^o): -8.896
  • Long. (^o): -140.2861
  • Depth (m): 150

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007390	Metagenome	352	Y
F032032	Metagenome	181	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211613_10055504	F032032	AGGAG	MKKRMISKETIKVGKKSYTEEKYWPMFPSDRIITTRMRKITMGDIFNVCEFVLISAAGFFLLKFMFDFGAAMEAWSELDKLMRGY
Ga0211613_10055505	F007390	GAGG	MRKFLILLFLSVGLSQTTFTDQEMINLENDFIYLENKVDSLAYQDSLKAIMITTLEEELKLTNEELKLTNEQLTLTEKKVKLVKPSWWENKWLYFGYGATLSYAVVTLINQMGDAIDIF