NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211613_1000869

Scaffold Ga0211613_1000869


Overview

Basic Information
Taxon OID3300020353 Open in IMG/M
Scaffold IDGa0211613_1000869 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000686 (ERX556093-ERR598998)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7593
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (69.23%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_123
CoordinatesLat. (o)-8.896Long. (o)-140.2861Alt. (m)Depth (m)150
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000245Metagenome / Metatranscriptome1468Y
F001493Metagenome683Y
F002715Metagenome / Metatranscriptome535Y

Sequences

Protein IDFamilyRBSSequence
Ga0211613_10008692F002715AGGAMAEGKELQDVKLEVGLLKNEVEARGKQTEVLLSKLDLTTDKLQQLTVQIIKLNTRQEDHLKHDTTVRDELKILHTRIGDLHDKQLSAQKEIEHRLDRLDQYKSKLMGMIVVVGGALGVTVTLALHFL
Ga0211613_10008694F000245GGAMKTYSRFKEGSLDDKLDKYVSNEIKKRKLARFPVNATDDYQMKKKKPAFTFPSPTGEMIIKVWLRPMAKPAKSHTKAFNYELDDK
Ga0211613_10008699F001493N/AMKSFRGYLLNEVAWTESLSTMLFDLPRAGFKDIHIPLSPSIFKRIWPKPVRTKAFHLTDLVGVQKLKKMQGSKRSIAAFYNMTDYMIQSGIRTDGGYVVELEGDVLAASPDDLSTQPDKSGRRWITVSTLMNPSTASDPGLGGKSKLPGLEEDIKSLLVDIMAKNDLGPYKKTMSTNEVGLGWSYLGKSTGGKEKSLIIKDYIDGMEKIMKKHSKSLRQLFIAYTMDRTQVPDPDSGDTAMWDEIVVNNVKMKKIHVSPEFSPDFAEVIKVEKPTGGRMYGFANKDKDIYGFPFELYHETGEMVDYINRTLR
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Biomedical Sciences Research Center "Alexander Fleming"
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