Scaffold Ga0211613

Basic Information
Taxon OID	3300020353 Open in IMG/M
Scaffold ID	Ga0211613_1000328 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000686 (ERX556093-ERR598998)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020353 Open in IMG/M

Scaffold ID

Ga0211613_1000328 Open in IMG/M

Source Dataset Name

Marine microbial communities from Tara Oceans - TARA_B100000686 (ERX556093-ERR598998)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

CEA Genoscope

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	14286
Total Scaffold Genes	40 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	31 (77.50%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

14286

Total Scaffold Genes

40 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

31 (77.50%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_123
Coordinates	Lat. (^o)	-8.896	Long. (^o)	-140.2861	Alt. (m)	Depth (m)	150
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

TARA_123

Coordinates

Lat. (^o)

-8.896

Long. (^o)

-140.2861

Alt. (m)

Depth (m)

150

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000302	Metagenome / Metatranscriptome	1337	Y
F000379	Metagenome / Metatranscriptome	1211	Y
F005266	Metagenome / Metatranscriptome	406	Y
F023710	Metagenome / Metatranscriptome	209	Y
F024645	Metagenome / Metatranscriptome	205	Y
F077787	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211613_100032813	F023710	AGGAG	MQKNIEKQIQIFIDGIGSIKRQEFVHGTLYLKLEEDRDCDFIHKELRTFYKEFINPEGGVNMYFVGDEFAFDFVPADAETPVFTDEDKEDSDVDILLELENEMRRGK
Ga0211613_100032814	F000302	GAGG	MVKTMTQDTKDRIADLERQKIVLEDRLEYVGNNLVKMHQIEQEIFEIEDTIGKLTA
Ga0211613_100032827	F005266	GGA	MSVHIRYRFLKEKGDYLKDEHLSRGYTVVEANTVHPFHRVLKEFYKDFKGKGVQILNIWRTPAGEANYRIEEEERRMSE
Ga0211613_100032828	F077787	AGGCGG	VSEKQFKIVLSYDVQKTFIVDAKNEEEAYDKAYDGEGSVMNEDWEYRDHIETEEV
Ga0211613_100032831	F000379	AGGAG	MQKIDYTNKHDIMVGYIDRSDNVVAVETGWKTTPKALTEVLMGQYNSKEMAQELVDSPTLMPTFKKEDYWYVDGFGDVIESNLSWNKEEMRKNVGHLFLFMKGTWQYSDNGIDWWPAVEEFGEVA
Ga0211613_100032840	F024645	AGGAG	MIKNKKQFYITELHLGDDGLESTTDYAGPFTLNKARKVLERMFKYPGAFINPYNYSIRGPRHTNENGNPTEFYAPGEWAREIN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211613_1000328

Overview

Ecosystem & Geography

Associated Families

Sequences