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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300020353 Open in IMG/M |
| Scaffold ID | Ga0211613_1000241 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_B100000686 (ERX556093-ERR598998) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | CEA Genoscope |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 17202 |
| Total Scaffold Genes | 31 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 22 (70.97%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (71.43%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | TARA_123 | |||||||
| Coordinates | Lat. (o) | -8.896 | Long. (o) | -140.2861 | Alt. (m) | Depth (m) | 150 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000615 | Metagenome / Metatranscriptome | 984 | Y |
| F019227 | Metagenome | 231 | Y |
| F021858 | Metagenome / Metatranscriptome | 217 | Y |
| F022974 | Metagenome / Metatranscriptome | 212 | Y |
| F029555 | Metagenome | 188 | Y |
| F039176 | Metagenome | 164 | Y |
| F062153 | Metagenome | 131 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0211613_10002411 | F000615 | N/A | MCRIRCFYEGFEEGTYGWAEMIMSYDDDIAGFIKHWSCGGKRMVITEHIEIG |
| Ga0211613_100024114 | F021858 | N/A | MIDVNKFENRIVKFKRISEGVEKVSHAEIRRIDYDTSSAMPRSVTARFVGPPLNAIMTLNYDEERKTFRGGLGPDIIESDFNIEEYIKDSQLGSGNETVVRSRRRGRAKF |
| Ga0211613_100024119 | F029555 | AGGAG | MSDYKNGYRSEVARYIRIPIERKEYEEYVETRDLVDLAGRIERGEPHEVNPNYGGQGYTYLYPETKDLGRLKVTPVEDTWKLEWENLHG |
| Ga0211613_10002412 | F022974 | AGG | MENNETYYIAKLSKKGEHLSSEIHKTLEAARLWAMKETKLLVSDTFLRKCKADDVVVEIDEHFFGYEISAEELIKNSKKVLINT |
| Ga0211613_10002413 | F039176 | GAG | MIVDRESEFGGIDLSLNRSLEELISSYFEAHGAGIELDEDTRPEELDAYYALENYLADMGAI |
| Ga0211613_10002414 | F062153 | GGGGG | MRIILNGKVAKNVTVTKHEGKYIGYSLRNNSGKKWSLVRNRKDDRYLGVVNHGSMYNHKFRGYEWLSDETGDLVGVC |
| Ga0211613_10002419 | F019227 | AGCAG | MICSYCYKTQIAVKHDVGHWWNNPEDSVYVCSDDCYTKLEKLVKDGTWMDHKPEAIFGKKKHKSPSFDKPSPRDKGPKSVTDKQFSADLGKFMT |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |