Scaffold Ga0211613_1000212

Overview

Basic Information

• Taxon OID: 3300020353
• Scaffold ID: Ga0211613_1000212
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000686 (ERX556093-ERR598998)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18700
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (76.92%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_123
• Coordinates
  • Lat. (^o): -8.896
  • Long. (^o): -140.2861
  • Depth (m): 150

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000659	Metagenome / Metatranscriptome	952	Y
F017718	Metagenome / Metatranscriptome	239	Y
F050657	Metagenome	145	N
F074008	Metagenome	120	Y
F105861	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211613_100021213	F000659	GGA	MKTFSKYLEENSKYIVSKNPSDKKWYVMGHVGRNKWMPVSSGFKNKAQAQKWAKSQDKVDDAARGEIGGV
Ga0211613_100021219	F105861	AGGA	MEKNDNYFDNKSEAEKLRNVASMVNDIVNTKPDDSLEVKESDTETKEELPEVDPVVDLVGKAISTHNPNRGAFFQGVQKQGTTK
Ga0211613_100021220	F017718	AGGA	MTQYNYELDLVNERLKQIDDIMEKFSGFPEVKQKLQGARDALVESEEEIMTYYDLTSLEK
Ga0211613_10002125	F074008	AGGA	MVRYAKKTTKQLRKENSGSHAQMSKQLNYSIDIDPDSISYMTFETQSEAKAFAQRMQEDGNHIIEIKDDYR
Ga0211613_10002128	F050657	N/A	MRQSQSTKPTKDPFFKGTNETDTDLRTVLNDPYFETGGALYKECTNPNDPNDKSLCIVVQDASPFDGAVIRYTSFKLVEQELGGNDIACQYEYDIEVPPHDLGYEITDKDGQEFEKRLGEWVIEILQRQMEKHAAEDRNNNT