Scaffold Ga0211505_1008211

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211505_1008211

Scaffold Ga0211505_1008211

Overview

Basic Information
Taxon OID	3300020352 Open in IMG/M
Scaffold ID	Ga0211505_1008211 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000497 (ERX556084-ERR599144)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2857
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (72.73%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_067
Coordinates	Lat. (^o)	32.1	Long. (^o)	17.7	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F032042	Metagenome	181	N
F074584	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211505_100821110	F032042	GGA	MMDKLHFNIGDKVMSRWGEAKIVRMDITSFGEPKYGDSVSNVPVDYNGPWVADLDNGHWAYGSQISLIEGHNQYA
Ga0211505_100821111	F074584	GAGG	MKFSRNTIDGVKTEIEIPDDSRLDEVLEEFQNFLRACGYTIEYNTVLDLRDMDE

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