Scaffold Ga0211505_1004160

Overview

Basic Information

• Taxon OID: 3300020352
• Scaffold ID: Ga0211505_1004160
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000497 (ERX556084-ERR599144)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4146
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (76.92%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_067
• Coordinates
  • Lat. (^o): 32.1
  • Long. (^o): 17.7
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040051	Metagenome / Metatranscriptome	162	Y
F053969	Metagenome / Metatranscriptome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211505_100416010	F053969	AGGAG	MQTTNTLTQTEKAFIVNFLANTLAGLTDLNAESLVEALAPAEAAYFADSAFVRLQDAQEVQQHLNILYSTAQQEPARFTFTIAQAAAAICSYDTEYRETIIEQLQYACTEDLQRFYPAFANANCKQTNFATLVERMYDNY
Ga0211505_10041602	F040051	GGA	MSKMKKRRLLMLDALLDDIQEVLKKYSGTDWEIMDIDFADGGAVFTVSAGQLGVDNEDD