Scaffold Ga0211601_1106240

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211601_1106240

Scaffold Ga0211601_1106240

Overview

Basic Information
Taxon OID	3300020351 Open in IMG/M
Scaffold ID	Ga0211601_1106240 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000676 (ERX555955-ERR599089)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	642
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_124
Coordinates	Lat. (^o)	-9.067	Long. (^o)	-140.6346	Alt. (m)		Depth (m)	120
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000999	Metagenome	809	Y
F063764	Metagenome / Metatranscriptome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211601_11062401	F000999	N/A	MTLEEFIKRADEVEQKTDFAVSWFAKKYNKTIFRVGNMSKEGCRTWEQGGKKYMCFWDTVLERYTTCIDPMITYKKARN
Ga0211601_11062402	F063764	GAG	MAESTKFFRQKKGQWVWIFDVETNRKKKVELQLLLDKVNHTLRNENRKYFALKEERDEFAKDYRS

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