Scaffold Ga0211599_1001202

Overview

Basic Information

• Taxon OID: 3300020350
• Scaffold ID: Ga0211599_1001202
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000676 (ERX556036-ERR599084)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8189
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (90.48%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_124
• Coordinates
  • Lat. (^o): -9.067
  • Long. (^o): -140.6346
  • Depth (m): 120

Associated Families

Family	Category	Number of Sequences	3D Structure?
F053336	Metagenome	141	Y
F066845	Metagenome	126	Y
F078817	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211599_10012024	F066845	AGAAGG	MERMLNNKKIAIAKHNAGKKRHADIFTGCLALGTLKQTQQKIKAYKLPKKS
Ga0211599_10012028	F078817	AGGAG	MSKPLTRKVKDHRGNTHEVYKWYWMKGWEFYQTEPSDEFGVTFGYMTNCPCPEWGSQHEAELDDISSVTAERFDLWELAPPQGWEWLEKEN
Ga0211599_10012029	F053336	AGGAG	MQDYFEYLAELQASGTMNMMWAPTMLQADFDLEKKEAREIFSKWCESLKNE