Scaffold Ga0211511_1043852

Overview

Basic Information

• Taxon OID: 3300020349
• Scaffold ID: Ga0211511_1043852
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_E500000081 (ERX289006-ERR315859)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1129
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_023
• Coordinates
  • Lat. (^o): 42.1659
  • Long. (^o): 17.7285
  • Depth (m): 55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F069424	Metagenome / Metatranscriptome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211511_10438522	F069424	N/A	NIFNLSNISDILYNIVLVTTLINKIINLHCFSMKNSTKNLIEEIIELDDCPFTEFEVHGFFIGLVLSSGEQKTKKDKMMKFLDLTEVSQPLTDKLTNLISLELSKGYLEIYPESDYMTKENVDIATALSEWTYYFLISYQNSSSSNDDLREKEILDIFDEISQINQKYQTDDKSSPMDNFSDINSYITKSALYLFNRYSNE