Scaffold Ga0211511_1019823

Overview

Basic Information

• Taxon OID: 3300020349
• Scaffold ID: Ga0211511_1019823
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_E500000081 (ERX289006-ERR315859)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1799
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_023
• Coordinates
  • Lat. (^o): 42.1659
  • Long. (^o): 17.7285
  • Depth (m): 55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001416	Metagenome / Metatranscriptome	699	Y
F058965	Metagenome / Metatranscriptome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211511_10198231	F001416	AGGAG	MPLVKKKLSITAGSTSAQVLQGTPYEYLNPGTRIIVAAAVDTAGTATADTVMDFTIN
Ga0211511_10198232	F058965	AGGTGG	MAFLGDFGKIFLGGANTGTVVGGLTGNLALGAGAQRAAELVSKVNIPQASSVIGGATAVSEAQQTMPQETGMSGTGREFLGFSDMGGQGFESVFSSPQARPGGMQVQQAGLPAIIGGGVAAGRGLYGMLFGGAAGIAAPMIIDQFTGQPKKLRVTRKLQRDVKQAVMLLGPEVVANQLGVGVDVVVFIMQKKIRNDGPFVTRAAVRKTRQTVRKMKSLCDLYDDLRPAARRRAPVRRTSAAKVMQIKN