Scaffold Ga0211511_1001785

Overview

Basic Information

• Taxon OID: 3300020349
• Scaffold ID: Ga0211511_1001785
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_E500000081 (ERX289006-ERR315859)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6473
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (61.54%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_023
• Coordinates
  • Lat. (^o): 42.1659
  • Long. (^o): 17.7285
  • Depth (m): 55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002374	Metagenome / Metatranscriptome	566	Y
F007722	Metagenome / Metatranscriptome	346	Y
F009559	Metagenome	316	Y
F021299	Metagenome / Metatranscriptome	219	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211511_10017851	F007722	N/A	TLTGDIGTIKKSIQTLNNRINGLNSPKLNDELLQYAMKQQSNVHDIKKNNLGG
Ga0211511_100178513	F009559	N/A	MNQVLLYAGLILASVSFFLCCYACLRVGKLLNSVKGLEWDTVATLTGDIG
Ga0211511_10017855	F021299	N/A	MRVGKLLNSVKGLEWDTVATLTGDIGTIKKSIQTLNNRINGLNSPKLNDELLHYAIKQQNGAMTPSSDKLGG
Ga0211511_10017859	F002374	N/A	MNQVLLYASVILASLSFFLCLYACARVGKLLNSVKGLEWDTVATLTGDIGTIKKSIQTLNNRINGLNSPKLNDELLQYAMKQQANVTNINQNKLGG