Scaffold Ga0211600_1034375

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211600_1034375

Scaffold Ga0211600_1034375

Overview

Basic Information
Taxon OID	3300020348 Open in IMG/M
Scaffold ID	Ga0211600_1034375 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000676 (ERX556089-ERR599161)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1291
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_124
Coordinates	Lat. (^o)	-9.067	Long. (^o)	-140.6346	Alt. (m)		Depth (m)	120
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F054095	Metagenome	140	N
F066845	Metagenome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211600_10343753	F054095	AGG	MIPQWKMNGKDMRFDGSFEVGIVEVRDLFDDLVVTLWVEQEKDNTLTVKSLGGIGNGRYSVQVVAKKKPIEEGEGWKEC
Ga0211600_10343754	F066845	AGGA	MLNNKKIAIAKHNAGKKRHADIFTGCLALGTLKQTQQKIKAYKLPKKS

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