NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211600_1030255

Scaffold Ga0211600_1030255


Overview

Basic Information
Taxon OID3300020348 Open in IMG/M
Scaffold IDGa0211600_1030255 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000676 (ERX556089-ERR599161)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1401
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_124
CoordinatesLat. (o)-9.067Long. (o)-140.6346Alt. (m)Depth (m)120
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004819Metagenome / Metatranscriptome422Y
F062840Metagenome / Metatranscriptome130N

Sequences

Protein IDFamilyRBSSequence
Ga0211600_10302551F062840N/AMYNKFREGLIGNNAYLNWKAYIKKVASACTYRRVDNTLDDTTETNLANKYAKALVKDM
Ga0211600_10302554F004819N/AARFHARVLKEDLATLPFVLDTCNRDINIARATNYVTWDHDKEMWCEVDHLMMNFYIKAKTSETRQELEDKINRGVVELLKGPRYYEQAKVYCMIDMHYPEDESIYDLVKKPKKDRNPYCVSGNEGDITYHVTLHVQECNPTDLTIYDNSNRGDFFDLSGNNLESPMADLERIVNGG
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