Scaffold Ga0211600_1011358

Overview

Basic Information

• Taxon OID: 3300020348
• Scaffold ID: Ga0211600_1011358
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000676 (ERX556089-ERR599161)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2753
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_124
• Coordinates
  • Lat. (^o): -9.067
  • Long. (^o): -140.6346
  • Depth (m): 120

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002334	Metagenome	569	N
F099424	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211600_10113584	F002334	GGA	MTLGVFHQVYTRPKATEEAIKSFRQFHPDNPYVLICDGGKSFHRISKRYNCLYVHEEDNLGYRDHTHSSGIYGMTKEEVLEWLRRFRMACTLCNTDHIIMMEDDILIRGEIHVPEEWEFAGQAKPGNLLQEPFTDYLTEKYGVEWNVNYYGTGGGSIFNAKTFLENYERVIKIFDEEFDYIKENLCGNLGWVDVWMPMYYFLCGKQYRHNNLLTETTSNPIWTISKEPIVHQYKVHYE
Ga0211600_10113585	F099424	N/A	MSKITFGYIVGGEDKHYNNLLRSLESLERIEQPYEVVILDADSRLETDEDKPNVRIIPFPVDEEKGEGWFKPHYWQ