Scaffold Ga0211600_1006800

Overview

Basic Information

• Taxon OID: 3300020348
• Scaffold ID: Ga0211600_1006800
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000676 (ERX556089-ERR599161)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3934
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_124
• Coordinates
  • Lat. (^o): -9.067
  • Long. (^o): -140.6346
  • Depth (m): 120

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021867	Metagenome	217	N
F038425	Metagenome	166	Y
F056907	Metagenome	137	N
F061287	Metagenome	132	Y
F074138	Metagenome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211600_100680010	F061287	AGGAG	MDKDDRETMIKSLMKLKLQRKLLDKLTDTEIQRLFSVLKGYSI
Ga0211600_100680012	F038425	GGAGG	MEGDRSEVHCPNCDKRMYWWGYASSYTGDGSSEIGLGCENPKCEGHEIMPEDVYDAIVTEEERIDG
Ga0211600_10068002	F074138	GGAGG	MDWNKLYIHPSEDTTDEDIRDFIEWVSRKGERLGFKVELKWSNKAESGSTDIMSTNPLDKSDETH
Ga0211600_10068003	F056907	N/A	MTDNAYYIPGETGSGPKMPSGEYEAIITSLEMTENVKCGGFIADIFKPVYRIANSEYENTDVRDNGVFRYKEKAGYNFKPSRNWGFAKFCGILGLDNEVNGKVTLPYLELDMIDGYKVVIDVSYKNFVNESGNPVRYPVATLKKKLGEVPF
Ga0211600_10068004	F021867	GAGG	MDNNENVNWDKVNRGKVRYGFALELYKSGGVLKPSEMGKIEGFVDYVMEGVGDDLTVNKTSDEPRSPLMSIDECKEVVKTETEGSRAFVKGMVHMDAEGLKEPDLKRVLDALESGKITMVNLQDSLDRIQSIKDSYKK