Scaffold Ga0211600_1000280

Overview

Basic Information

• Taxon OID: 3300020348
• Scaffold ID: Ga0211600_1000280
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000676 (ERX556089-ERR599161)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25326
• Total Scaffold Genes: 46
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 42 (91.30%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_124
• Coordinates
  • Lat. (^o): -9.067
  • Long. (^o): -140.6346
  • Depth (m): 120

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002078	Metagenome / Metatranscriptome	596	Y
F013820	Metagenome / Metatranscriptome	268	Y
F022754	Metagenome / Metatranscriptome	213	Y
F036736	Metagenome / Metatranscriptome	169	Y
F044544	Metagenome / Metatranscriptome	154	Y
F048916	Metagenome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211600_100028038	F036736	GGAG	VDKLNEMLIGALAVVGSFVTKRVFSNHDSLSNRISALEKTVVTKDDLIHIERNVEMILTHLINKGDKP
Ga0211600_100028039	F013820	AGGAG	MIKTVIDFVDKMMPGHKTYAIMIIGMGMMICQMLGYHHFDQEAWGVLGIGGAATWKMGQDRKKK
Ga0211600_10002804	F044544	AGGAG	MSYFVVKYCELKACQHWRLGNTCTKDGLPIAENLKYVADLHDSSICQVRKQINEYRLEHLLEEPK
Ga0211600_100028040	F022754	N/A	VNELAIAILLVIPSPYKMVNWTVNQVPTQIQLIHKSGLEVSYNASPVSCSFRPRNNREMVFKSSETACYAVYDLGSPTFIRHPDHWYPVEPQKSLKMNVGD
Ga0211600_100028041	F002078	AGGAG	MDIAAMFEGQGWFEIAGQVVLIFTAITGALPDKFVQKIPILSTVWPIFNWLAGNIFNNINHPKGMAASADVEKEIDEAKAKVRARSGMPDVLDGM
Ga0211600_100028042	F048916	GGA	MGILSELAAPVANFGLGLYNADTYYSKECAWYEEVRLSQDTKQWLLQNNPPPIVSEDLAQVAKNNDIYKQVCDPKEPKD