Scaffold Ga0211600_1000267

Overview

Basic Information

• Taxon OID: 3300020348
• Scaffold ID: Ga0211600_1000267
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000676 (ERX556089-ERR599161)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26271
• Total Scaffold Genes: 56
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (25.00%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_124
• Coordinates
  • Lat. (^o): -9.067
  • Long. (^o): -140.6346
  • Depth (m): 120

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027866	Metagenome / Metatranscriptome	193	Y
F032827	Metagenome	179	Y
F034910	Metagenome	173	Y
F038711	Metagenome	165	N
F050421	Metagenome	145	Y
F084339	Metagenome	112	Y
F101312	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211600_100026719	F027866	N/A	MKTYKTYQARNAVKAALVTNHIKAGKKQGQTHAEAKAEAYRLHNIKAALPILEKHFSWQG
Ga0211600_100026726	F050421	AGGA	MMIEDHEVKVGDEVRVGMQLMIVDEITDYDTVVVIDQDGGELELTENEIDVFINQ
Ga0211600_100026734	F034910	N/A	MKKLYKVELNEIHCATFEVEATSEHDAVNEVLDGAGDLVHSEYSYTPDNDAVRSVTCKED
Ga0211600_100026735	F032827	AGGAGG	MKAIIEIELGNEAFGNNDAERLFEMRQVMEKLMDNATQIMAASVGDFVTAQDYNGNTVARMDIVEGDVKAKKVYGLENHNY
Ga0211600_100026738	F101312	N/A	MKNLLSELSPENWKKYANAVADGATHARFTYADGSFHPYPIEKINHGMNAHRLSSLGLVLVKVTKEGTETLARLTFWNSFVDDREINPH
Ga0211600_100026741	F084339	N/A	MKDNKNEFKKDLHEWLAEMKRRREINRKRDEEQARWDTQFNAPLNLKDRD
Ga0211600_100026742	F038711	GGA	MKNQEMELINDNGTWKIKWNDGFERNFESFFEARLHFVALVNQQIAMER