Scaffold Ga0211504_1025309

Overview

Basic Information

• Taxon OID: 3300020347
• Scaffold ID: Ga0211504_1025309
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000497 (ERX556109-ERR598994)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1544
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_067
• Coordinates
  • Lat. (^o): 32.1
  • Long. (^o): 17.7
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019643	Metagenome / Metatranscriptome	228	Y
F052546	Metagenome	142	Y
F065685	Metagenome / Metatranscriptome	127	Y
F090247	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211504_10253091	F090247	N/A	RSKKKADQWRNDLPKMKIIGQERYITCPEIRRGRGVVTCTKSKNSVNCQLCVQGLANVLFPSH
Ga0211504_10253092	F019643	AGGAG	MAKYYIKSGTLELIFSTELEPYDACRRVIHECNSDDELDEYMYLDERGYRDYTSADTTTFVVDTEQILRKEGYIK
Ga0211504_10253094	F065685	AGGAG	MKPVVGIGSNTKYGRVLKVQHDGVVVENGRGERETVSFRKIESTLKGVKK
Ga0211504_10253096	F052546	GAGG	MIKNYINTAAILILPTILYSGCAIIPNKNVLTMNKTIELDERAIEKLNVGVRLEWI