Scaffold Ga0211504_1023354

Overview

Basic Information

• Taxon OID: 3300020347
• Scaffold ID: Ga0211504_1023354
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000497 (ERX556109-ERR598994)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1625
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Xanthomarina → Xanthomarina gelatinilytica (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_067
• Coordinates
  • Lat. (^o): 32.1
  • Long. (^o): 17.7
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024563	Metagenome / Metatranscriptome	205	N
F048332	Metagenome / Metatranscriptome	148	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211504_10233543	F024563	AGGA	MKIEYTTKKDLIRQIEDKGFKPLSMNATIQDMKIYLLALNVEATLKKVAKQVTK
Ga0211504_10233545	F048332	AGGGGG	MEILKSIRLRQLRKEREEIKANRKAWINLHKHSDLDASLSRTFLAYQNAINRINTSIRNLKNDY