Scaffold Ga0211504_1016785

Overview

Basic Information

• Taxon OID: 3300020347
• Scaffold ID: Ga0211504_1016785
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000497 (ERX556109-ERR598994)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2027
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_067
• Coordinates
  • Lat. (^o): 32.1
  • Long. (^o): 17.7
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021990	Metagenome / Metatranscriptome	216	Y
F062683	Metagenome / Metatranscriptome	130	Y
F088933	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211504_10167853	F021990	AGCAGG	MSKLKEFIVMTIACLAFMLITGIAKANPVTDWITSEKNKIVEYQTKSWADSKVQLGDTIDSILNLFNKDKDNVTQD
Ga0211504_10167857	F062683	GGA	LDKLDIMGYTNTFDSFDSPILVHPGAYFFPKSVENRAFYWGLPFLAIYDTIKTLLTLNRKGLYDNNI
Ga0211504_10167858	F088933	N/A	KSCTLYCTINELRGPKMIEETIVIEACNKTLDQIADGDMDGAIATISNLRADNQKKVDEFDKWAEEESKKQENMAVPDDIDQDDIVENFG