Scaffold Ga0211504_1015880

Overview

Basic Information

• Taxon OID: 3300020347
• Scaffold ID: Ga0211504_1015880
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000497 (ERX556109-ERR598994)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2106
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_067
• Coordinates
  • Lat. (^o): 32.1
  • Long. (^o): 17.7
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005218	Metagenome / Metatranscriptome	408	Y
F085545	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211504_10158801	F085545	N/A	MVNIDNLVNEWAYRCEKGYPDMGSPSDLRVLKTILKEEGITIPQFQQVIAEQEKSDELTIKDIEDILNQIKDDKAAIKKIYNFISNRPGEKGFFGISDASNVTDRTVDTSNAPQVIFDLLSNSGDLKKYIDFNKPGFGEIGKEGNFLDFFEGKSGISKDTLTKMFNFSGKESGRGVGKGEVAMALLFKDVKMAAAGGGDLNWGGKSLEVKGSSARLGGRDRKFEGFERTALGQLATKYDKSDEQFRTLIPNLADEEGLDKKELLNAVVDFESKAHPKGDAKKYFTENMLDNPIEIRKAFTKNLIRHYSNSKNIDHFIWWNSNNKFGKYISFSPDEADKLVDDGLLRTNNAAVYQLDPSISKP
Ga0211504_10158803	F005218	N/A	MANDNFYGYKRSPKKRAKALDYKGVDMEFESVNPYEFKKGMYCELNKLGAATLRESDEEQREKATETVLKNLKDVPAYYSYMEHYEVTTRNMDRKPSFKTFLKELEGHSMKEIGDKFTEDKMKEIKLKENIRAEVRNKINELLKTK