Scaffold Ga0211504_1013038

Overview

Basic Information

• Taxon OID: 3300020347
• Scaffold ID: Ga0211504_1013038
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000497 (ERX556109-ERR598994)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2409
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium 4572_77 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_067
• Coordinates
  • Lat. (^o): 32.1
  • Long. (^o): 17.7
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011937	Metagenome / Metatranscriptome	285	Y
F048245	Metagenome / Metatranscriptome	148	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211504_10130381	F048245	N/A	EIPITIGRKTAGTDLGWDIDVDNTDGYVNKMSLPFDTQPADGIYGIVYPVPVKGPLTFELTVPDNGSYTIRVITYNGTLMKSTTKEFFSGYVSFQMDLSDLASAIYLLQVSNGRFVKTFKIIKK
Ga0211504_10130382	F011937	N/A	MSENKGFFSEIKNQVVTGIGLVITAAFGLLIANMQSIFEPKEDVVEQHIMEQRINPPAASKDTIVISKTIVIPPKKEKKEEEISW