Scaffold Ga0211504_1012591

Overview

Basic Information

• Taxon OID: 3300020347
• Scaffold ID: Ga0211504_1012591
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000497 (ERX556109-ERR598994)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2473
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_067
• Coordinates
  • Lat. (^o): 32.1
  • Long. (^o): 17.7
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003769	Metagenome / Metatranscriptome	469	Y
F024299	Metagenome / Metatranscriptome	206	Y
F069439	Metagenome / Metatranscriptome	124	N
F077379	Metagenome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211504_10125911	F024299	GGGGG	MQNVNNTKIKTVTTFENADNSVQLDIDLADKNYVVNGRKVESVTLYTDADCYGDLAVNWEEEDDSNYVHNTSMLMRDTSDSNNNTETMGEFYWERAFNTQLQAILLEAGFSTQAVADVSGSEWGMQDVGRASYDANCIAEEMLTAHNLVLQEA
Ga0211504_10125913	F003769	GAGG	MQQLKTVTIKTSNKVESVHVDTLYTIINNCYNNLQVVEADCTSASYFLNSANIFAQLQCLYVENETNDYVSIESVMQVFSNNITFYDESSLFTNVVKNTAMQNINIENYMYLCN
Ga0211504_10125914	F077379	AGG	MLTQKALNKKLTATLCTTTNTIFIHKNNKAHLQYTVNSSKVIHNANAQQLQAFYKLPSTLLQKCKNFNKHINTNTLKQLLT
Ga0211504_10125915	F069439	AGGAG	MQKIQNTQFTISTNNNFKNSIFLQTNAKNNLTYMCSSIEKVALCLQAHNLKNATVKFASNFLLNKNMLQTNLAHATYIRIANA