NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211504_1010535

Scaffold Ga0211504_1010535


Overview

Basic Information
Taxon OID3300020347 Open in IMG/M
Scaffold IDGa0211504_1010535 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000497 (ERX556109-ERR598994)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2784
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_067
CoordinatesLat. (o)32.1Long. (o)17.7Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032309Metagenome / Metatranscriptome180N
F033761Metagenome / Metatranscriptome176Y
F075318Metagenome119N

Sequences

Protein IDFamilyRBSSequence
Ga0211504_10105352F033761GGAGMTIINNHTYFVLDTVFQNRHKELFDFFEGQGADIEINEDFAGLKTILTSKDKDDYPYDFDPAFESNLDNAKGFVLHLKISGEVVATYAAKKLAIPTFVDAMKEKFSGTYEDVSDISGQSAYSSCQWVSKDHRGKKLGRILDHLKKHICFDLMKCTNNYAIHKEALANYHTEHLGYNTTQKLALIPNGDVGGAGEVIDKIYNLTYTTATEWTNKQSDIKALYS
Ga0211504_10105353F032309GAGMRNETQEFFKFTQSKPFMDITHFWDIPYEEMLDEIKLVNEDYWRRPFDADNNQIDRMKLDDSESVNHYPGLEGALIEAHGWKSLCFLNETGDSKDQITRFPPIFNTAGDYKATLKYFLDNRKWTNVSEFSPTLVKFFKEVISKYMHVGQIFVTRLDGGGVITEHNDIPEDSKHLLGGEQVHMFDMLNTFNLCLNHVQSCYSVFDNKVMPAYDGCLRWTNVGKKHWVVNMNRNPQYQIIWQGIYKKDFRRLVMENK
Ga0211504_10105355F075318N/ALATRQFGCMGAIDFETPKQSLTFIKKMRKQGFILEDGSENVSTAVFCLPYIISDDDFDLFERAIKECM

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