Scaffold Ga0211504_1008868

Overview

Basic Information

• Taxon OID: 3300020347
• Scaffold ID: Ga0211504_1008868
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000497 (ERX556109-ERR598994)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3120
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_067
• Coordinates
  • Lat. (^o): 32.1
  • Long. (^o): 17.7
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015151	Metagenome / Metatranscriptome	257	Y
F022016	Metagenome / Metatranscriptome	216	Y
F060786	Metagenome / Metatranscriptome	132	N
F076507	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211504_100886811	F060786	AGG	MVKYVLSQKTGEWIPIGPEDMDYTRYGKTLDELIEMRDAINKIVYGTKRFKT
Ga0211504_10088683	F022016	AGGA	MAFDMYKTHKLADHLESEAYGHCQWAISAFYDLELEENEYGYEQDVYEVLTKDQIEEIDAYISEHTAENMWHEPYSISCLNTIVDRWYEEHEGDD
Ga0211504_10088684	F015151	GAGG	MITLKNGLIISADNNGFESINHLTSKIDKGSFTKFNELPDIFYKEMDTDDRTLLTKIDNPELSTILQRTKQYGI
Ga0211504_10088687	F076507	AGGTGG	MSLILSIAEAKEKGMWRLVEQLERDLERRQLLKMAPLEDVKEKDVNNVWEEPDDWDDL