Scaffold Ga0211504

Basic Information
Taxon OID	3300020347 Open in IMG/M
Scaffold ID	Ga0211504_1008537 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000497 (ERX556109-ERR598994)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020347 Open in IMG/M

Scaffold ID

Ga0211504_1008537 Open in IMG/M

Source Dataset Name

Marine microbial communities from Tara Oceans - TARA_B100000497 (ERX556109-ERR598994)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

CEA Genoscope

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3207
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (62.50%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

3207

Total Scaffold Genes

8 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (62.50%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_067
Coordinates	Lat. (^o)	32.1	Long. (^o)	17.7	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

TARA_067

Coordinates

Lat. (^o)

32.1

Long. (^o)

17.7

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025513	Metagenome / Metatranscriptome	201	N
F033629	Metagenome	177	Y
F051178	Metagenome / Metatranscriptome	144	N
F104070	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211504_10085371	F033629	N/A	YKGIMAIEQLDKKGTAYLQGIQGLNYLGKMSGYKKPMNILKSYLKSDGKRKTLYLKFDEGKIDEVLKGVYQIKINPSDKNFLNDLRDELEDNGEDIDKSKTKPGQTITFKSGFQLYLSGRTLSNVIDESGSAVAAKKPTNDQQEDGFIINLKKGKMLENLQINKEIGFQFGKDWYNSFTRSFAGFTSKIISKKDLNQYEFYRDSDNKKLEMLNQITDPAILPSSKDNWNPSDVWAVKIDQKVRLAKEIDKLYTERIKNNNVSIERINKFIETQFKNKSLIGISLKQVLGNSANVDKITKDAKYIDSVKFLKFGSKMEFDVLQTYFDINVKMSCIKNNTLDYLFRFRPRGSSSATTNNGEGRLSGSGPADGAIDKKNVLSVLLPNADNITKEKYGKSKTILEALNFLVASKKYKGLQSWTTKGKYKFLNIKNLDKKGDDKLIRRGLLNLNYAYLIDTYRDQKELYKKFYLAAKKVNEFSSIHYKISG
Ga0211504_10085374	F104070	AGGA	MIGAALNSLNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLIYTYTH
Ga0211504_10085376	F051178	GAGG	MKKGKCTVCKKVFTVKKGETLKGKLGIIPVDLCKTHLKKVLSYDEMNLSDTRVSA
Ga0211504_10085378	F025513	N/A	GTLAMVSAVGAIETDQYLLGAAAVMTGITSYAMTLFSQSLYAEAEVREKSSWNDLNEYYINGEK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211504_1008537

Overview

Ecosystem & Geography

Associated Families

Sequences