Scaffold Ga0211504_1006696

Overview

Basic Information

• Taxon OID: 3300020347
• Scaffold ID: Ga0211504_1006696
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000497 (ERX556109-ERR598994)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3801
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_067
• Coordinates
  • Lat. (^o): 32.1
  • Long. (^o): 17.7
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007611	Metagenome / Metatranscriptome	348	Y
F009491	Metagenome / Metatranscriptome	317	Y
F030052	Metagenome	186	Y
F039092	Metagenome	164	Y
F072842	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211504_100669610	F030052	N/A	MDNITDMNNKLQQLEDLLQVHDWYYAMSDDNYYYKLGRKQYEQIWKLMDELKDNGYFTESENLYDKYSK
Ga0211504_100669611	F039092	N/A	MKITINQIGKTYSVDSEDKVTVTHNHDSIVSVCGEYFKNKHTGEWLSELEVEQAICQRYEEDEENRYY
Ga0211504_100669612	F007611	N/A	MKKKTITVLDYSSARVFQYSVKINVHSEQFIQFKGHRLKDVEWMEHQISSIITN
Ga0211504_10066966	F009491	N/A	MSNTIKNSQIKILKINNKTYLPYQLHQLPKFFDKYTTDFFNLKGYCYINLNDHSDSFNLQNFKNRLTFNKDIHYSLKR
Ga0211504_10066969	F072842	N/A	MSRLHRELLKQQLMNYDYSKTPVNKMILVELDCKQMTVQYEGPDGFTHFKCSGGSIENLIEYMNSEVSRKPDHDLIIVDRSDKVW