Scaffold Ga0211504_1006246

Overview

Basic Information

• Taxon OID: 3300020347
• Scaffold ID: Ga0211504_1006246
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000497 (ERX556109-ERR598994)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3991
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (68.75%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_067
• Coordinates
  • Lat. (^o): 32.1
  • Long. (^o): 17.7
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033640	Metagenome / Metatranscriptome	177	Y
F075422	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211504_100624612	F075422	AGGAG	MTKIKIEPMFKKSVVDIEFFYNEETGVWIHYEQGWRWGTFYADVTDEEMKELRIHNAYVEETRRQEDFEISALTDYEMNDTWDGVWGDIRVYKSGWTDEQLTELKETVENSEDWWDWLIDNGFEPQESETYICGQISIELEGENENETTLPKETN
Ga0211504_10062462	F033640	N/A	MITLYFRSVDDLDGWTEEFETVEEAASHFLYQMGKPYDIGSSYAVNTYGDVTCSIEGTTWQELGLA