Scaffold Ga0211504_1004383

Overview

Basic Information

• Taxon OID: 3300020347
• Scaffold ID: Ga0211504_1004383
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000497 (ERX556109-ERR598994)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5112
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_067
• Coordinates
  • Lat. (^o): 32.1
  • Long. (^o): 17.7
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019631	Metagenome	228	Y
F048235	Metagenome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211504_10043831	F019631	N/A	EMNKADMITEFTDIATLVAAEVLNCGETNKERVLRFNAMFDSFMLYTAQQEGVELTQGDVEAFKLNLLMQQYTNMLSAHPVQGCDGINKIIHIYDDRMRYAESIYDYYQPLDTL
Ga0211504_10043835	F048235	AGGA	MATLKTKLRKKHFDTQFRMKKRMEKIAAYDLEYAQSYDINEILSGNEAYQEFVSNKNSDV