Scaffold Ga0211504

Basic Information
Taxon OID	3300020347 Open in IMG/M
Scaffold ID	Ga0211504_1004111 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000497 (ERX556109-ERR598994)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020347 Open in IMG/M

Scaffold ID

Ga0211504_1004111 Open in IMG/M

Source Dataset Name

Marine microbial communities from Tara Oceans - TARA_B100000497 (ERX556109-ERR598994)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

CEA Genoscope

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5333
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (28.57%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

5333

Total Scaffold Genes

7 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (28.57%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_067
Coordinates	Lat. (^o)	32.1	Long. (^o)	17.7	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

TARA_067

Coordinates

Lat. (^o)

32.1

Long. (^o)

17.7

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004606	Metagenome / Metatranscriptome	431	Y
F008190	Metagenome / Metatranscriptome	337	Y
F017335	Metagenome / Metatranscriptome	241	Y
F018962	Metagenome / Metatranscriptome	232	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211504_10041113	F017335	N/A	MNIKSLTLKNKLTDDKTGQQYFDLSAPSFKYKRELGVKALHYVQQDQVGRVDKISEIYFGTGAYIDAICIVNNIFNPFTIQEGDILAIPKLDQLDLVYKRPNPAERPSATLAQYVDTGRQSEKDQARIQRLIQKAKTKKTGVKSPIPPNMLQQGQDAKVYEGGKIKLGANLPTRNRTNT
Ga0211504_10041115	F004606	N/A	MKTHRIFNKGQNVYCLLASHTNPNILLPVKGKILDSKWDPVNPLYQIRIIKFYDNMKFLKQHFFDMNFRHMFENRARKMILKAEDFKTAKVLEDRLNEKDRERFYVVIESVMCTKTKVGLSELFEKVQLYMISKNLKEIRDISARPFFKGPLSIDSVREFDARYKKGWSDKFEKSSLSIDKYLSSLG
Ga0211504_10041116	F008190	AGGA	MEEEHIEFNFIYSNDALRVKTFLGNVPRSIECINYMDIFNKLTKNDFYQYEPSDAVVSSYLMRQLQNAIGRNISTTIFYVLGSLNKETIGGIQSYVESLSDKSITYKIYHSPDIIVNGTAELFDDIIEFE
Ga0211504_10041117	F018962	N/A	EPARNGVIKKVIDDNHGGGREHFTSTDVYESNENDKNQYSYVKRFFFDLCDDLGLEVGSKFDKTVLDINTRWGTHFEPTVKDIEFKIKSLKSELKELEEWKKNI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211504_1004111

Overview

Ecosystem & Geography

Associated Families

Sequences