Scaffold Ga0211504_1003995

Overview

Basic Information

• Taxon OID: 3300020347
• Scaffold ID: Ga0211504_1003995
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000497 (ERX556109-ERR598994)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5433
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_067
• Coordinates
  • Lat. (^o): 32.1
  • Long. (^o): 17.7
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032719	Metagenome / Metatranscriptome	179	Y
F059988	Metagenome / Metatranscriptome	133	Y
F067802	Metagenome / Metatranscriptome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211504_10039952	F059988	AGGA	MNKFTERRTGMPSVYKATYEEGWELKNLGNDYNENLMRNSFSNYMFRNERLGIFLDEYLKPIMTFWINKVKYLRIYYNFGVPKDYQKIN
Ga0211504_10039954	F067802	N/A	MIKEIYSRDIDSPKYNNDVIEVTDQLQQLILKVENCLFTRKGDVLGAPNMGCNLDDLIFSLVLNESVIAQRISTQIQTYCSNSSSSQFGVDVRVQFYSTAERNGCLVDIYIDERRVIGAL
Ga0211504_10039956	F032719	N/A	LKVLDKILEKHKTVIESYRTYSSFKEKFPNIHLMIDLKTADQIVEMYYPKIREKIFDLITKADMNEGFINYDADTGRIQIKDAKLMRCFEINGIDIVDSIIQGNIVNCDIFSCDLKNSSIFESNLFGATVAEDSKIEESYVSRNVICEDSYVFGKRGVFSGEMVGGIFRQGRATKLARFGDNTEVIEIEKIK