Scaffold Ga0211504_1003103

Overview

Basic Information

• Taxon OID: 3300020347
• Scaffold ID: Ga0211504_1003103
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000497 (ERX556109-ERR598994)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6449
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (54.17%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_067
• Coordinates
  • Lat. (^o): 32.1
  • Long. (^o): 17.7
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005751	Metagenome / Metatranscriptome	391	Y
F059457	Metagenome	134	Y
F089161	Metagenome	109	N
F102072	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211504_100310314	F102072	GGAG	MTKKNEYEIERDKQKLLRKKAMNSLTKEQIDAINFTHETLRDALSMLTECHDLYLSDINKLNDAFWKLKHQFNLENNND
Ga0211504_100310316	F059457	GGAG	MKTTKIGNTELYTARVLNMSVAQYYGVVKEYSEILNQAREINKEQLKKDKEKAELNLIYGVRYNLNRLVLEKINGENNE
Ga0211504_100310321	F005751	N/A	MDIYSIEFDPNKLSHQHEELGMRFADFDTAVELMKKEEKMIVAELTIYYSKNGGYKNMTELNGLIYSNKKFKDFFDRYQRNLKERNQSKIRFETFKAFRDDLRTKVVNERELAKHNL
Ga0211504_100310323	F089161	GGA	MSDKYNLSDELNQSRELDQDQEKETAIYKHLADIGVMDKLVFALNEYIIKFGRTSNVHDQCFDLKLQVLANKKHLQDWVDKI