Scaffold Ga0211504_1001463

Overview

Basic Information

• Taxon OID: 3300020347
• Scaffold ID: Ga0211504_1001463
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000497 (ERX556109-ERR598994)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10604
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (95.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_067
• Coordinates
  • Lat. (^o): 32.1
  • Long. (^o): 17.7
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015716	Metagenome / Metatranscriptome	252	Y
F016668	Metagenome / Metatranscriptome	245	Y
F025259	Metagenome / Metatranscriptome	202	Y
F038194	Metagenome / Metatranscriptome	166	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211504_100146311	F015716	GGAG	MSDEGLYFLIGSLSIYVLAVPLLYHMVEPEDPEENNSGPIRFALMWPLVALEVIYRIIVGENNNDGTGSY
Ga0211504_100146317	F038194	AGGAG	MSYEIKPGDIAIILSPVIEEGEWTGNIKTGMVFGSPGSEDGMSAALDEALTMSAAQKYLELYPDAWEDFVDLRADIMQAMFPDQYAEAQEELEADKTVEVEGNVYRLGRWTKTKGNA
Ga0211504_10014632	F025259	AGGA	MIASKAIKVYASVGQPDGEYVTTVFSADDAIKVRTKLFKRTGVCRVIFKTVKEKELASYTNNEVHHL
Ga0211504_10014639	F016668	AGAAGG	MIPIGQLRLLLTKAGLEFVITRVDGNVAHVNILVGDQPDVHS