Scaffold Ga0211504_1001181

Overview

Basic Information

• Taxon OID: 3300020347
• Scaffold ID: Ga0211504_1001181
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000497 (ERX556109-ERR598994)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12138
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (19.05%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_067
• Coordinates
  • Lat. (^o): 32.1
  • Long. (^o): 17.7
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F061838	Metagenome / Metatranscriptome	131	N
F066233	Metagenome / Metatranscriptome	127	N
F068848	Metagenome / Metatranscriptome	124	N
F080617	Metagenome / Metatranscriptome	115	N
F099229	Metagenome / Metatranscriptome	103	N
F103276	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211504_100118111	F068848	N/A	MNMSDNKDMETQYGMLFKFMNQSRSKYMGLDLTYNFELLPENRISVDIFAEGKFDLPIRTKQMFRNMFMEFYLKDSKYFNIPKSTVGLLDFNNISLNGERLGDRITMDDNFKKDLVEVESKLKKYYSIDIADNPQGSFKLESFDNDLKTYIEILDEDSLMYTVDIKDSQKITLNGNEFNKNTIVDFLDSVDLGEDNSFTSPTKSRPAKKMDPDSIFESISNAVWENSVEGDGASLELFWNKLMSNGMNYQNYFMENIGMLSVVNFGSYDGMFNDNMHNYNSESQSEVLSIFVGWLESNKGKYKL
Ga0211504_100118112	F061838	GGA	MSDMFNKVMPKSYDDLSKYSNMVMDHSVLDGKIKSIEIDFEPSKEPIRYGDYEMKQPGTLIVNIFLNTEDFYEISDSLPGLEKVYELRPELKADSFLELNGYEFIKNIIFPYISQKFLRLMGLSLGDVPYVDFNLINHRGETILNYDEDLDTFIGSENSSVWRKIS
Ga0211504_100118116	F066233	N/A	MELENSLDGELRVEAQEKGKMAVKILDALVFNKFGGIEYSMMIRKTMANRYNPTAGSIYFEFDVDVDVDKTFQPSPTYDKGYEDYIYEIGDHIGKALRYVNLHDYMTEPMFTYVNDELVENEIDRLENKLILYLQSQYEGLSYDSIREADIGYYFYKGETDNPYMRVEYVGQPPLRDGDRQSTDTIEEREYFSCDNLYDIMSDLFDRSPLSISYDGENYTCQ
Ga0211504_100118117	F099229	N/A	MDKDIDKIVEIGKVLLNTPTLKAIYKDKFEISTVDFEFVEKTSKSQFTTKYEHYIFKVTLYTNIPLNFDEEIKSGEIEGYDEIENEIWEYGIDPFYLADIIIPEQILNIILPKGKDARKVAIELSIIGDEGQVIWNDHMFGRPASSQFH
Ga0211504_100118118	F080617	N/A	MEDNKLKWSLEKLLNTVGRNLAMNYYGFDSEYEVVSIIDEKTGEEVTDFNFGDTENYTATVRSKEMLPEIFDVKIEPLFRYGKYAQPMDLQFNLENLTKYISPNQIAIQLVGPEWKPGENTYRTLQSFEDKWGRSLDRDANDFKVNPDAWIELNNGSVVDKLTGDSFPLMFNGLIDKTEAWNIARVDDDEWWGSLTDLDKERLTDNFS
Ga0211504_10011814	F103276	GAG	MEKFLDKTKSDNKIVDMYTDVRKWLQSEGHTSITSQSISKAPHDIWRLMENLRGEVSVLRDTLRRYGILESDDVYEEWLKSRLSKIDKQYPLIDERND