NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211504_1000531

Scaffold Ga0211504_1000531


Overview

Basic Information
Taxon OID3300020347 Open in IMG/M
Scaffold IDGa0211504_1000531 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000497 (ERX556109-ERR598994)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19327
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (82.76%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_067
CoordinatesLat. (o)32.1Long. (o)17.7Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002260Metagenome / Metatranscriptome577Y
F003807Metagenome467Y
F051963Metagenome / Metatranscriptome143N
F070054Metagenome123Y
F078735Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0211504_100053116F002260AGGAMSVPYQRISDATVADIIFYDPSAERRASQMQVDWDDYFKVGSQEILYWLEFGWWPQYCDTVMGATYYTNLPNGQMISAFNPNLLIKNDQTLIRLDTFMAVKIFYESIVSDTSNVNSVDAANYGHALERFEKEQEKALQLMNFYDLNQDAPDGPTTKLEENWTADPDYFNNNRRWF
Ga0211504_100053117F051963AGGAGVALSNLPLVDKAKVVTYLRDVAKIQTPIIEVSATFPSEDDNIAYGLYVDDVTDNGRSVNQLGVQSCASMYNAEDQFNILYISFQNDPQAPVILNSINNLAANVNFFDGYTSVEFDRDVTIGQRSEIHNYTFTLTRLEFNNAYQS
Ga0211504_100053119F003807AGGMSETHDVWLKSDEEKLRSLISDEAKMIPMLVNMQATVRQLKAKQQFRLALLNQLLEDLDKNDSTK
Ga0211504_100053121F078735N/AMKSAKMASIMQIDGIGKRYGLLPSQVIKDADTFDLYIMDAAMSFEHYHHKKQIDGKAPVPDYTDDQLLEILGK
Ga0211504_10005313F070054GAGGVSKPAKKQLMGITDRPWMKQEVHKIMNRMVTELSLYMNPIELDKCMDFMWTLESGEFDTNMSVGDCEMQLKIILGSERYEMIRESWKENNSKLMSVYGTLKYKCKKTNKVYDGLDPEDDEKDYEKVYV
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