Scaffold Ga0211706_1019016

Overview

Basic Information

• Taxon OID: 3300020345
• Scaffold ID: Ga0211706_1019016
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000427 (ERX556079-ERR599137)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1562
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_072
• Coordinates
  • Lat. (^o): -8.7006
  • Long. (^o): -17.9915
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015789	Metagenome	252	Y
F061923	Metagenome	131	Y
F101305	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211706_10190162	F101305	AGG	MRNFLIYYRPDVHQGRENIKGLAFNYSVEVEEQFANYSEQDKCAGITAKCTETGEWKRFRWDRILSMVAN
Ga0211706_10190163	F015789	N/A	MRDKKKVKTVKVKGPWVDGVQTVKEIPLDEWTSYTPLNRRVQGEWFRVVEWCE
Ga0211706_10190164	F061923	N/A	MRHETRTHLAEQGVEIASVRGTLQALAESWGNDYEHVKYLQKRISDMEEKLSNIQNKLTEIEWSEETEWLDKSEKN