Scaffold Ga0211626_1022894

Overview

Basic Information

• Taxon OID: 3300020343
• Scaffold ID: Ga0211626_1022894
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000475 (ERX555975-ERR599174)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1731
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_068
• Coordinates
  • Lat. (^o): -31.0263
  • Long. (^o): 4.6977
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004453	Metagenome	437	Y
F004764	Metagenome / Metatranscriptome	424	Y
F023367	Metagenome / Metatranscriptome	210	N
F023877	Metagenome / Metatranscriptome	208	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211626_10228941	F004453	N/A	MSVKFTEIELETIANAMDDYINYDDENLNTESLFGGLSVADRVNSIQTKIEELLTLMETN
Ga0211626_10228944	F004764	GAGG	MNYGIEQNVEILSDHYVERFKQLVDNDQIHDANAIGQEYLCNNGEVENDNYQWLYVNYQFKEAY
Ga0211626_10228945	F023877	GGAGG	MTTKQMIKEYVDDHFNNFGFYPYDVEVDGMIFSYGNYWTILNDERFD
Ga0211626_10228947	F023367	N/A	GTGKTTKGRVVTMKKFIFEEKFISYANVEIYAENEENARLQFQNGNYQYYDISDFTDGHELIGVTEEVCDS