NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211626_1020504

Scaffold Ga0211626_1020504


Overview

Basic Information
Taxon OID3300020343 Open in IMG/M
Scaffold IDGa0211626_1020504 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000475 (ERX555975-ERR599174)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1850
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_068
CoordinatesLat. (o)-31.0263Long. (o)4.6977Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031250Metagenome183Y
F057434Metagenome136N

Sequences

Protein IDFamilyRBSSequence
Ga0211626_10205043F031250AGGAMEGIYNKENLFAEFAMQKTNEDKVKFLKEMKQLKKDQPHMFRGTSITQKNFDNLIVEWSKDKPWYEINQENKRRLKASNSVEGEDVSL
Ga0211626_10205044F057434AGGAMFHLIYTRSNYDMESIGGHFESHITLYRNVPYSELSKFLEMQKDPELLKECDTRYFEYQQERGITDTSFHSQISIVDDEEYFKTYKYVYRSSYNGPSGLIPEEEDYFMEYGQKSNFMLIHDYDPNYTWFGKDWTQEMINAEYEKRALDNSARV
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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