Scaffold Ga0211604_1065222

Overview

Basic Information

• Taxon OID: 3300020342
• Scaffold ID: Ga0211604_1065222
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000674 (ERX556117-ERR599036)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 726
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_124
• Coordinates
  • Lat. (^o): -9.1552
  • Long. (^o): -140.5284
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006348	Metagenome / Metatranscriptome	375	Y
F008889	Metagenome / Metatranscriptome	326	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211604_10652221	F006348	GGAGG	MNKFYIVKKIGFDTKFKTENEIEDLKWKSDNGLGVWSAEGKTEDERISKLFDKVQDYMGVYLTEFSYCDNRPHPLT
Ga0211604_10652222	F008889	AGGAG	MYTTEQFNKDVQGLRDLIKMCEDLERENDKKADALIKQINGENAFFWRAN