Scaffold Ga0211604_1057301

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0211604_1057301

Scaffold Ga0211604_1057301

Overview

Basic Information
Taxon OID	3300020342 Open in IMG/M
Scaffold ID	Ga0211604_1057301 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000674 (ERX556117-ERR599036)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	784
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_124
Coordinates	Lat. (^o)	-9.1552	Long. (^o)	-140.5284	Alt. (m)		Depth (m)	5
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041815	Metagenome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211604_10573011	F041815	N/A	MTAPKDRQNLERDVRLRYVTQSGQSSIHGETLYEVQTQEAQSFAFHSGTGQGSTGKGPGTGKAVLYTPGCSMEILGEGLKVRSPGDISQLPAKIIKCKKGDIVFDVENGDITFRARNINFEANGSGNKDGQILID

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.