Scaffold Ga0211605_1017556

Overview

Basic Information

• Taxon OID: 3300020339
• Scaffold ID: Ga0211605_1017556
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000674 (ERX555929-ERR599080)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1630
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_124
• Coordinates
  • Lat. (^o): -9.1552
  • Long. (^o): -140.5284
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029404	Metagenome	188	N
F066135	Metagenome	127	N
F105877	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211605_10175566	F029404	GGAGG	MTTVDFVEIELGGDKWKISWDTRTRKKIKTTGEKSGLTHTIYSLQNLTPAQAYDIAMLQLEWLKKDQVYVI
Ga0211605_10175567	F066135	GGAG	MNGLRIHDVNNIKVKSVDFDEFKTIVVTVTDQANKDFELTLFTDKGFTPNLEVEHDNG
Ga0211605_10175568	F105877	N/A	MSNHENEMLKENIFDMWVEYLELDGWPKGDLETYREAARRTESEWLEMN