NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211571_1032484

Scaffold Ga0211571_1032484


Overview

Basic Information
Taxon OID3300020338 Open in IMG/M
Scaffold IDGa0211571_1032484 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001964 (ERX555920-ERR599099)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1423
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_137
CoordinatesLat. (o)14.2016Long. (o)-116.696Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000942Metagenome / Metatranscriptome826Y
F013699Metagenome / Metatranscriptome269Y

Sequences

Protein IDFamilyRBSSequence
Ga0211571_10324841F000942GAGMSNPFELRFKLLEMAQGYLQDQAQRNQDYVTSAWTLAQEQGEANMKLWSELQPDSYSIEDIKKKASELYEFVEKK
Ga0211571_10324842F013699GGAVVPIKHIKMGSIKNMSTYKGGYRTEVARYELAPYERTKYEEYLRTHDLIDLKGRVDRGEPNPIDPTYGGIGYQYFYPDTVDLGRVKVTLESDEWKFRWEGRR

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