Scaffold Ga0211510_1069906

Overview

Basic Information

• Taxon OID: 3300020336
• Scaffold ID: Ga0211510_1069906
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_E500000081 (ERX289008-ERR315860)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 834
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_023
• Coordinates
  • Lat. (^o): 42.1659
  • Long. (^o): 17.7285
  • Depth (m): 55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021557	Metagenome	218	N
F054939	Metagenome	139	Y
F064806	Metagenome / Metatranscriptome	128	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211510_10699061	F054939	GAG	MSVYTFTCTIMVCMYLAYLWGRKLTKGEIAAEVAEGTLNRLEKEGFIKYIINKKTGEKEFKRFK
Ga0211510_10699062	F021557	GAGG	MRVILCALLLTSNAIACDYKSNDEVKFEGSIESVRLIDKKVYPYVDDTRICTMHIESRIEGEWYPSKAKYIFGSEMSEDTACSLAENRAKVKVMREKLPEKLTSKRNLSCNLTTVRNSCKIIYMNVEMPMVGTQRVKLKTCEE
Ga0211510_10699063	F064806	GAG	MFKFIFGIIVGFMIFKFDWIDSMSDAINDYGVKEAIIEKLQEEVDIDNLENDG